PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0838s0012.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 273aa    MW: 31197.1 Da    PI: 9.8631
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0838s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.7e-19131219197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v +  +l lp +f+  +   +ee+++++lede+g+++e  +i r+++    l++GWk+F+ +++L++gD ++F+l++ ++f
  Araha.0838s0012.1.p 131 FVKSMVRSHVYSCFWLGLPSRFCVGNF--PEETMEIVLEDEEGEEYEAVYIGRRSG----LSGGWKRFALDHKLDDGDALLFELVEPKRF 214
                          89*********************8886..66899****************666665....9**********************9987887 PP

                          ..EEEEE CS
                   B3  91 elvvkvf 97 
                            ++ vf
  Araha.0838s0012.1.p 215 --KIYVF 219
                          ..66666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.47E-23124221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-21124220IPR015300DNA-binding pseudobarrel domain
CDDcd100173.87E-19129220No hitNo description
PfamPF023622.6E-17131219IPR003340B3 DNA binding domain
SMARTSM010193.8E-27131222IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239131222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAYEEARKLR LQENHKRFQD LGISQISKTL TQITKKTPQR NPRPIDKALF ATAEPRRSSR  60
IRTVISSYRD DVAVDTGRTS NLRRSRHSST WATYISRPLH ECKFASYEEK VGALKAAEKF  120
QSRLESPHPS FVKSMVRSHV YSCFWLGLPS RFCVGNFPEE TMEIVLEDEE GEEYEAVYIG  180
RRSGLSGGWK RFALDHKLDD GDALLFELVE PKRFKIYVFK GNENANLTSA GKRGRATSSE  240
EEDKDVEESG DEEHSSRATK RSSARLLRKR KA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0192281e-85AB019228.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7.
GenBankCP0026881e-85CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280945.11e-161hypothetical protein CARUB_v10026947mg
SwissprotQ9FHB21e-154Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLR0GRK81e-161R0GRK8_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0008_22961e-160(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-127B3 family protein